ACCESS Resource Provider Software Discovery

v

Module: /

Domain: Artificial Intelligence

Keywords: singularity artificial intelligence machine learning pytorch

methylpy v 1.4.3

Module: methylpy/ 1.4.3

methylpy is an analysis pipeline for DNA methylation data.

Domain: Biological Sciences

Keywords: singularity bioinformatics

OpenSlide v4.0.0

Module: OpenSlide/4.0.0

OpenSlide is a vendor-neutral software foundation for digital pathology that supports various slide formats.

Domain: Other

Keywords: singularity utilities image-processing

aocc v5.0.0

Module: aocc/5.0.0

AOCC loads AOCC compiler setup

julia v1.5.2

Module: julia/1.5.2

The Julia Language: A fresh approach to technical computing

Domain: compilers

Keywords: Julia

lazygit v 0.40.2

Module: lazygit/ 0.40.2

A simple terminal UI for git commands, written in Go with the gocui library.

Domain: Other

Keywords: singularity utilities

mvapich2 v2.3.5

Module: mvapich2/2.3.5

An open source Message Passing Interface implementation.

Domain: libraries

Keywords: MVAPICH2 MPI Intel

openmpi v4.0.5-nvhpc20.11

Module: openmpi/4.0.5-nvhpc20.11

Purpose ------- PGI Compilers pgcc, pgc++, pgf90, pgf95, and pgfortran and OpenMPI 4.0.5 included

Domain: libraries

gromacs v2020.4-gpu

Module: gromacs/2020.4-gpu

GROMACS (GROningen MAchine for Chemical Simulations) is a molecular dynamics package primarily designed for simulations of proteins, lipids and nucleic acids.

Domain: Computational Chemistry

Keywords:

ncdu v 2.5

Module: ncdu/ 2.5

Ncdu is a disk usage analyzer with an ncurses interface.

Domain: Other

SPAdes v 3.14.1

Module: SPAdes/ 3.14.1

SPAdes – St. Petersburg genome assembler – is an assembly toolkit containing various assembly pipelines.

Domain: Biological Sciences

Keywords: singularity bioinformatics

nwchem v7.2.2

Module: nwchem/7.2.2

High-performance computational chemistry software

Keywords: nwchem

nvhpc v21.7

Module: nvhpc/21.7

Purpose ------- PGI Compilers pgcc, pgc++, pgf90, pgf95, and pgfortran also called nvc, nvc++ and nvfortran

Domain: Compiler

QuantumEspresso v 7.3

Module: QuantumEspresso/ 7.3

Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).

Domain: Materials Sciences

Keywords: DFT ab initio pseudopotential

nvhpc v21.2

Module: nvhpc/21.2

Purpose ------- PGI Compilers pgcc, pgc++, pgf90, pgf95, and pgfortran and OpenMPI included also called nvc, nvc++ and nvfortran

Domain: Compiler

htslib v 1.13

Module: htslib/ 1.13

HTSlib A C library for reading/writing high-throughput sequencing data.

Domain: Biological Sciences

Keywords: singularity bioinformatics

gent v 1.0.0

Module: gent/ 1.0.0

This program computes the cross entropy for groups of sequences that have been assigned to groups on the basis of biochemical, physiological, or other biological property. The sequence assignments are cross-validated, again by the cross entropy measure, to check for problems with the alignment or group assignment.

Domain: Biological Sciences

Keywords: singularity utilities

blat v 36

Module: blat/ 36

Blat produces two major classes of alignments (1) at the DNA level between two sequences that are of 95% or greater identity, but which may include large inserts; (2) at the protein or translated DNA level between sequences that are of 80% or greater identity and may also include large inserts.

Domain: Biological Sciences

Keywords: singularity bioinformatics

intel-dpct v2023.2.0

Module: intel-dpct/2023.2.0

vcftools v 0.1.16

Module: vcftools/ 0.1.16

VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.

Domain: Biological Sciences

Keywords: singularity bioinformatics

QuantumEspresso v 7.2

Module: QuantumEspresso/ 7.2

Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).

Domain: Materials Sciences

Keywords: DFT ab initio pseudopotential

intel-debugger v2023.2.0

Module: intel-debugger/2023.2.0

asciinema v 2.0.2

Module: asciinema/ 2.0.2

asciinema is a free and open source solution for recording terminal sessions and sharing them on the web.

Domain: Other

Keywords: singularity utilities

STAR v 2.7.10b

Module: STAR/ 2.7.10b

Spliced Transcripts Alignment to a Reference (STAR) is a fast RNA-seq read mapper, with support for splice-junction and fusion read detection.

Domain: Biological Sciences

Keywords: singularity bioinformatics

NanoPlot v 1.42.0

Module: NanoPlot/ 1.42.0

Plotting scripts for long read sequencing data.

Domain: Biological Sciences

Keywords: singularity bioinformatics